Mornings in our house used to be a frantic scramble. Between getting the kids ready for school and my husband and I preparing for work, a healthy, sit-down breakfast felt like a distant fantasy. We were stuck in a cycle of sugary cereals and toast on the run, which left us all feeling sluggish by 10 a.m. I was determined to find a solution—something quick, nutritious, and, most importantly, something everyone would actually eat. That’s when I discovered the magic of egg muffins. After a few experiments, this Tomato Basil Egg Muffins recipe was born, and it completely transformed our morning routine. The first time I made them, the incredible aroma of baking eggs, sweet tomatoes, and fresh basil filled the kitchen. My youngest, usually a skeptic of anything green, devoured two without a second thought, calling them “pizza eggs.” My husband now grabs a couple on his way out the door, and I feel a sense of relief knowing we’re all starting the day with a protein-packed, wholesome meal. They have become our go-to for meal prep Sundays, ensuring a week of stress-free, delicious breakfasts.
Ingredients
Here are the simple, fresh ingredients you’ll need to create these wonderfully fluffy and flavorful egg muffins. Each component is chosen to provide the perfect balance of taste and texture.
- 12 large eggs: The foundation of our muffins, providing a rich, protein-packed base.
- 1/4 cup milk: A splash of milk (dairy or non-dairy works) adds creaminess and contributes to a lighter, fluffier texture.
- 1/2 cup grated Parmesan cheese: This adds a sharp, salty, and nutty flavor that perfectly complements the eggs and tomatoes.
- 1/2 cup fresh basil, chopped: Use fresh basil for its sweet, peppery aroma and vibrant flavor that truly makes these muffins shine.
- 1 cup cherry tomatoes, quartered: These little gems burst with sweetness when baked, providing juicy pockets of flavor throughout the muffin.
- 1/2 teaspoon salt: Essential for enhancing all the other flavors in the recipe.
- 1/4 teaspoon black pepper: Adds a mild, woody spice that balances the sweetness of the tomatoes and the richness of the eggs.
- Cooking spray or olive oil: For greasing the muffin tin to ensure the egg muffins release easily without sticking.
Instructions
Follow these detailed steps to bake perfect Tomato Basil Egg Muffins every time. The process is straightforward and designed for even the most novice of cooks.
- Preheat and Prepare: Begin by preheating your oven to 375°F (190°C). Thoroughly grease a standard 12-cup muffin tin with cooking spray or by brushing it with olive oil. Pay special attention to greasing the bottom and all sides of each cup to prevent sticking. Alternatively, you can use silicone or paper liners. Silicone liners are highly recommended for the easiest release.
- Prepare the Fillings: Wash and chop your fresh ingredients. Quarter the cherry tomatoes and finely chop the fresh basil leaves. Grate the Parmesan cheese if it’s not already grated. Evenly distribute the quartered cherry tomatoes, chopped basil, and grated Parmesan cheese among the 12 prepared muffin cups. This ensures that every single muffin gets a balanced amount of each flavorful ingredient.
- Whisk the Eggs: In a large mixing bowl, crack all 12 eggs. Pour in the milk, and add the salt and black pepper. Using a whisk, beat the egg mixture vigorously for about 60 to 90 seconds. You want the yolks and whites to be completely combined, and the mixture should be light in color and slightly frothy. This process of incorporating air is crucial for achieving a fluffy, soufflé-like texture in your finished muffins. For easier pouring, you can transfer the egg mixture to a large measuring cup or a pitcher with a spout.
- Fill the Muffin Cups: Carefully pour the whisked egg mixture over the ingredients in the muffin tin. Fill each cup about three-quarters of the way full. Avoid overfilling, as the eggs will puff up significantly while baking and can spill over the top, creating a mess and causing uneven cooking.
- Bake to Perfection: Place the muffin tin on the center rack of your preheated oven. Bake for 20-25 minutes. The muffins are done when they have puffed up, appear set in the center, and are lightly golden brown on top. To check for doneness, you can insert a toothpick into the center of a muffin; it should come out clean.
- Cool and Serve: Once baked, remove the muffin tin from the oven and let it cool on a wire rack for at least 5-10 minutes. The egg muffins will deflate slightly as they cool; this is completely normal. Running a thin knife or silicone spatula around the edge of each muffin will help them release cleanly from the tin. Serve them warm or allow them to cool completely for storage.
Nutrition Facts
These nutritional estimates are based on one muffin, assuming the recipe yields 12 servings.
- Servings: 12 Muffins
- Calories per serving: Approximately 95 kcal. A light and satisfying option perfect for a healthy breakfast or snack.
- Protein: 8g. An excellent source of high-quality protein, which helps with satiety, keeping you full and energized throughout the morning.
- Carbohydrates: 2g. Very low in carbohydrates, making these muffins an ideal choice for those following a low-carb or ketogenic diet.
- Fat: 6g. Contains healthy fats from the eggs and a small amount from the Parmesan cheese, which are crucial for hormone production and nutrient absorption.
- Sodium: 250mg. The salt content primarily comes from the added salt and Parmesan cheese, contributing to the overall savory flavor profile.
Preparation Time
These egg muffins are designed for efficiency, making them a perfect addition to a busy schedule.
The entire process is remarkably quick. You’ll spend about 10-15 minutes on preparation, which includes gathering your ingredients, chopping the tomatoes and basil, and whisking the eggs. The cooking time is approximately 20-25 minutes. This brings the total time from start to finish to a mere 30-40 minutes, with most of that being hands-off baking time.
How to Serve
Tomato Basil Egg Muffins are incredibly versatile. They can be dressed up for a fancy brunch or served simply for a quick meal. Here are some fantastic ways to enjoy them:
- The Ultimate Grab-and-Go Breakfast:
- Enjoy two or three muffins on their own for a quick, protein-rich start to your day.
- Pair them with a piece of fresh fruit, like an apple or a handful of berries, for a more balanced meal.
- Perfect alongside your morning coffee, tea, or smoothie.
- A Beautiful Brunch Platter:
- Arrange the egg muffins on a platter surrounded by other brunch favorites.
- Serve alongside slices of ripe avocado or a simple avocado toast.
- Offer a side of a simple green salad with a light vinaigrette dressing.
- Pair with a bowl of Greek yogurt topped with granola and fruit for a delightful contrast in textures and flavors.
- Lunchbox and Snack Time Favorite:
- These muffins are delicious even when served cold or at room temperature, making them perfect for lunchboxes for both kids and adults.
- Pack them with some veggie sticks (carrots, cucumbers, bell peppers) and a side of hummus for a complete and healthy midday meal.
- They serve as a fantastic post-workout snack, providing the protein needed for muscle recovery.
- Add Some Delicious Toppings:
- Serve warm with a dollop of zesty pesto for an extra basil kick.
- A spoonful of your favorite salsa or pico de gallo adds a fresh, spicy element.
- For a creamy addition, top with a small slice of avocado or a dollop of sour cream or Greek yogurt.
- A sprinkle of extra fresh basil or some red pepper flakes can elevate the presentation and taste.
Additional Tips
Unlock the full potential of your Tomato Basil Egg Muffins with these eight expert tips, designed to ensure perfect results and inspire culinary creativity.
- The Secret to Non-Stick Success: While greasing a metal pan works well, the absolute best way to guarantee your egg muffins don’t stick is by using silicone muffin liners or a full silicone muffin pan. Eggs have a tendency to adhere strongly to metal. With silicone, the muffins pop right out with zero fuss and minimal cleanup, preserving their perfect shape.
- Don’t Overfill the Cups: It’s tempting to fill the muffin cups to the top, but this is a common mistake. Eggs expand and puff up considerably when heated, much like a soufflé. Filling the cups only about three-quarters full prevents the mixture from spilling over, which can create a burnt mess on your pan and lead to muffins that are difficult to remove.
- Master Your Veggie Variations: This recipe is a fantastic base for customization. However, be mindful of the water content in other vegetables. If you want to add mushrooms, spinach, or zucchini, it’s crucial to sauté them first to cook out excess moisture. Adding watery vegetables directly to the egg mixture can result in soggy, spongy muffins. Diced bell peppers, onions, or pre-cooked asparagus are also excellent additions.
- Explore the World of Cheeses: Don’t feel limited to Parmesan. Crumbled feta cheese can add a briny, tangy flavor that pairs beautifully with tomato and basil. Shredded mozzarella will give you a mild, gooey texture, while a sharp cheddar or a smoky Gouda can lend a completely different and robust flavor profile to your muffins.
- Achieve Ultimate Fluffiness: The key to light, airy egg muffins lies in the whisking. When you beat the eggs, do it with purpose. Whisking vigorously for a minute or two incorporates air into the mixture. This trapped air expands during baking, creating a much fluffier texture. Also, be careful not to overbake, as this can make the eggs tough and rubbery.
- Meal Prep and Storage Mastery: These muffins are a meal prepper’s dream. To store them, first, allow the muffins to cool completely to room temperature. This prevents condensation from forming in the storage container, which would make them soggy. Store them in an airtight container in the refrigerator for up to 4-5 days for a week’s worth of easy breakfasts.
- Perfect Reheating Techniques: While they are tasty cold, you can easily reheat them. For a quick option, place them on a paper towel and microwave for 20-30 seconds until just warmed through. For the best texture, reheat them in a toaster oven, a conventional oven, or an air fryer at 350°F (175°C) for 5-7 minutes. This method helps to re-crisp the outside and keeps the inside tender.
- Freezing for Future You: Make a double batch and freeze them for later. To freeze, let the muffins cool completely. You can either place them on a baking sheet in the freezer until solid (flash freezing) and then transfer them to a zip-top freezer bag, or you can wrap each muffin individually in plastic wrap before placing them in a bag. This prevents them from sticking together and protects against freezer burn. They can be stored in the freezer for up to 3 months. Reheat directly from frozen in the oven or microwave.
FAQ Section
Here are answers to some of the most frequently asked questions about making Tomato Basil Egg Muffins.
1. Why did my egg muffins turn out watery and spongy?
This is the most common issue and it usually stems from one thing: excess moisture. If you add vegetables with high water content (like fresh spinach, mushrooms, or zucchini) without pre-cooking them, they will release their water during baking, leading to a spongy texture and a watery bottom. For this specific recipe, ensure your tomatoes are not overly juicy. For other variations, always sauté high-moisture vegetables first to cook off the excess liquid before adding them to the egg mixture.
2. My egg muffins deflated and look sad after I took them out of the oven. Is that normal?
Yes, this is completely normal and expected! As the eggs bake, the air and steam trapped inside expand, causing them to puff up beautifully like a soufflé. Once you remove them from the heat of the oven, the air and steam cool and contract, causing the muffins to deflate. While you can’t prevent it entirely, you can minimize it by not overbaking them and by letting them cool in the muffin tin for 5-10 minutes before removing them.
3. Can I make this recipe dairy-free?
Absolutely. This recipe is very easy to adapt for a dairy-free diet. To replace the milk, you can use any unsweetened non-dairy milk like almond, soy, or oat milk in a 1:1 ratio. To replace the Parmesan cheese, you can either omit it entirely or use a dairy-free cheese alternative. A sprinkle of nutritional yeast can also be a great substitute, as it provides a savory, cheesy flavor.
4. How long will these egg muffins last in the refrigerator?
When stored correctly, these Tomato Basil Egg Muffins will stay fresh and delicious for a good while. Once they have cooled completely, place them in an airtight container and store them in the refrigerator. They will last for up to 5 days, making them the perfect solution for your breakfast meal prep for the entire work week.
5. Is it possible to use a liquid egg substitute instead of fresh eggs?
Yes, you can certainly use a liquid egg substitute from a carton. Simply use the equivalent amount as directed on the packaging (typically, 1/4 cup of substitute equals one large egg, so you would need 3 cups for this recipe). Be aware that the texture and flavor may be slightly different from muffins made with fresh eggs. They might not puff up as much and could have a slightly denser texture, but they will still be delicious and convenient.
6. Can I add some meat to this recipe for extra protein?
Of course! These muffins are a great canvas for adding other ingredients, including meat. For a fantastic flavor combination, consider adding finely diced, pre-cooked ham. Crumbled, cooked beef or pre-cooked sausage would also be excellent. The key is to ensure any meat you add is already fully cooked and drained of any excess fat before you mix it into the muffin cups with the other ingredients.
7. Are these Tomato Basil Egg Muffins keto-friendly?
Yes, they are an excellent choice for anyone following a ketogenic diet. This recipe is naturally very low in carbohydrates, with the majority of its calories coming from protein and healthy fats. Each muffin contains only about 2 grams of carbohydrates, making it a perfect fit for keto macros. They provide a satisfying, flavorful meal without the carbs.
8. What is the best type of muffin pan to use for egg muffins?
You can use either a standard metal muffin pan or a silicone one, but each has its pros and cons. A metal pan generally provides better browning and a slightly crispier edge, but it is absolutely essential to grease it very well or use liners to prevent sticking. A silicone muffin pan is the champion of non-stick. The muffins release incredibly easily from silicone, often without any grease at all. However, silicone is a poorer conductor of heat, so the muffins may not brown as much on the outside. For ease and convenience, a silicone pan is often the preferred choice for egg-based recipes.

Tomato Basil Egg Muffins Recipe
Ingredients
Here are the simple, fresh ingredients you’ll need to create these wonderfully fluffy and flavorful egg muffins. Each component is chosen to provide the perfect balance of taste and texture.
- 12 large eggs: The foundation of our muffins, providing a rich, protein-packed base.
- 1/4 cup milk: A splash of milk (dairy or non-dairy works) adds creaminess and contributes to a lighter, fluffier texture.
- 1/2 cup grated Parmesan cheese: This adds a sharp, salty, and nutty flavor that perfectly complements the eggs and tomatoes.
- 1/2 cup fresh basil, chopped: Use fresh basil for its sweet, peppery aroma and vibrant flavor that truly makes these muffins shine.
- 1 cup cherry tomatoes, quartered: These little gems burst with sweetness when baked, providing juicy pockets of flavor throughout the muffin.
- 1/2 teaspoon salt: Essential for enhancing all the other flavors in the recipe.
- 1/4 teaspoon black pepper: Adds a mild, woody spice that balances the sweetness of the tomatoes and the richness of the eggs.
- Cooking spray or olive oil: For greasing the muffin tin to ensure the egg muffins release easily without sticking.
Instructions
Follow these detailed steps to bake perfect Tomato Basil Egg Muffins every time. The process is straightforward and designed for even the most novice of cooks.
- Preheat and Prepare: Begin by preheating your oven to 375°F (190°C). Thoroughly grease a standard 12-cup muffin tin with cooking spray or by brushing it with olive oil. Pay special attention to greasing the bottom and all sides of each cup to prevent sticking. Alternatively, you can use silicone or paper liners. Silicone liners are highly recommended for the easiest release.
- Prepare the Fillings: Wash and chop your fresh ingredients. Quarter the cherry tomatoes and finely chop the fresh basil leaves. Grate the Parmesan cheese if it’s not already grated. Evenly distribute the quartered cherry tomatoes, chopped basil, and grated Parmesan cheese among the 12 prepared muffin cups. This ensures that every single muffin gets a balanced amount of each flavorful ingredient.
- Whisk the Eggs: In a large mixing bowl, crack all 12 eggs. Pour in the milk, and add the salt and black pepper. Using a whisk, beat the egg mixture vigorously for about 60 to 90 seconds. You want the yolks and whites to be completely combined, and the mixture should be light in color and slightly frothy. This process of incorporating air is crucial for achieving a fluffy, soufflé-like texture in your finished muffins. For easier pouring, you can transfer the egg mixture to a large measuring cup or a pitcher with a spout.
- Fill the Muffin Cups: Carefully pour the whisked egg mixture over the ingredients in the muffin tin. Fill each cup about three-quarters of the way full. Avoid overfilling, as the eggs will puff up significantly while baking and can spill over the top, creating a mess and causing uneven cooking.
- Bake to Perfection: Place the muffin tin on the center rack of your preheated oven. Bake for 20-25 minutes. The muffins are done when they have puffed up, appear set in the center, and are lightly golden brown on top. To check for doneness, you can insert a toothpick into the center of a muffin; it should come out clean.
- Cool and Serve: Once baked, remove the muffin tin from the oven and let it cool on a wire rack for at least 5-10 minutes. The egg muffins will deflate slightly as they cool; this is completely normal. Running a thin knife or silicone spatula around the edge of each muffin will help them release cleanly from the tin. Serve them warm or allow them to cool completely for storage.
Nutrition
- Serving Size: one normal portion
- Calories: 95
- Sodium: 250mg
- Fat: 6g
- Carbohydrates: 2g
- Protein: 8g